Health Informatics researcher at Indiana University Indianapolis. I design and build AI-driven pipelines that extract, classify, and structure biomedical data from complex, unstructured sources.
I'm a Health Informatics researcher at Indiana University Indianapolis, working in the Luddy School of Informatics. My work sits at the intersection of biomedical science, large language models, and systems engineering.
I design and build multi-model LLM pipelines that extract, classify, and structure clinical data from unstructured biomedical text. I hold an MS in Bioinformatics from IU Indianapolis and begin my PhD in Health Informatics in Fall 2026.
If you need someone who understands both the biology and the engineering, let's talk.
Applied computational reverse vaccinology to identify novel vaccine candidates against Mycobacterium tuberculosis. Won first prize at an international conference at CBIT Hyderabad.
Research applying CytoCommunity, CellOracle, and VisionGNN frameworks for spatial transcriptomics analysis and gene regulatory network inference during my MS in Bioinformatics at IU Indianapolis.
Developed a multi-model LLM consensus approach to identify EHR-predictable eligibility criteria in NSCLC immunotherapy trials. Accepted as an oral presentation at AMIA 2026 Amplify in Denver.
A technical deep-dive into orchestrating five LLMs for clinical trial eligibility extraction.
Lessons learned from running large-scale model evaluations on university compute clusters.
How I went from computational biology to building AI systems for clinical research.
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Custom multi-model pipelines for structured extraction from clinical, biomedical, or scientific text. From design to deployment.
Expert guidance on applying LLMs to clinical trial data, EHR text, eligibility criteria, and medical literature at scale.
Rigorous comparison of open-source vs. proprietary models for your specific domain. Data-driven model selection on HPC infrastructure.
Hands-on research engineering for labs and teams working with clinical data, biomedical extraction, or phenotyping workflows.
Got a project that needs someone who understands both the biology and the engineering? I'm available for consulting, contract research, and pipeline development.
abdul@muqeethlab.dev